About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5744998_5764771_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5744998 - 5764771
Intron Length:
19774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GAAATAATAAAT
Flanking Amino Acid:
SRRHSPKARRGKKKTQEGKN
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
88.3
0.86
0.7
81.3
30.7
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
42.2
-0.5
1.8
55.65
38.8

Associated Gene:

Gene:
PRDM2
Ensembl Gene ID:
ENSAPLG00000029288
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044130
5726682 - 5771933
45252
ENSAPLT00000043842
5734144 - 5771933
37790
ENSAPLT00000044948
5724882 - 5770130
45249