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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5764880_5765603_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5764880 - 5765603
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGTT
5'SS Class:
major
3'SS Sequence:
CTTTGTGCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
CTTTTCCTACTT
Flanking Amino Acid:
SSADMRDSKEGHKEEDEKPS
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
75
35.2
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
71.9
0.49
1
70.4
40
Minor 5ss
30.5
-2.2
3.5
39
46.2
Minor BPS
52.8
0.17
2
75.59
41.9

Associated Gene:

Gene:
PRDM2
Ensembl Gene ID:
ENSAPLG00000029288
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044948
5724882 - 5770130
45249
ENSAPLT00000044130
5726682 - 5771933
45252
ENSAPLT00000043842
5734144 - 5771933
37790