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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5769976_5770084_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5769976 - 5770084
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAACAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATATTTAAAA
Flanking Amino Acid:
SSTKQELKDFRRLHFLNHG*
Intron Amino Acid Position:
1664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
52.3
0.05
1.2
51.7
40.6
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
58.7
0.27
1.6
66.43
39.7

Associated Gene:

Gene:
PRDM2
Ensembl Gene ID:
ENSAPLG00000029288
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044948
5724882 - 5770130
45249