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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_579690_580148_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
579690 - 580148
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAATGTCA
5'SS Class:
major
3'SS Sequence:
TCTTTGCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
64.9
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80
0.67
0.8
77.9
31
Minor 5ss
38.8
-1.3
3.2
48.2
41.9
Minor BPS
53.1
0.18
1.7
70.85
40.8

Associated Gene:

Gene:
RER1
Ensembl Gene ID:
ENSAPLG00000025171
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009968
579575 - 584459
4885