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Intron Name: Anas_platyrhynchos_platyrhynchos_22_580229_580539_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

580229 - 580539

Intron Length:

311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAAGATG

5'SS Class:

major

3'SS Sequence:

TTTATTTCTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

TGTGTTTTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

71.9

39.4

Major BPS

81.6

0.78

0.8

24.9

Major PPT

89.4

0.89

0.7

84.4

30.5

Minor 5ss

29.8

-2.3

3.3

38.7

46.6

Minor BPS

0.2

1.7

71.36

40.7

Associated Gene:

Gene:

RER1

Ensembl Gene ID:

ENSAPLG00000025171

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009968

579575 - 584459

4885

ENSAPLT00000041368

579300 - 587682

8383