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Intron Name: Anas_platyrhynchos_platyrhynchos_22_581325_582490_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

581325 - 582490

Intron Length:

1166

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAAA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

ATTCTTTAATCT

Flanking Amino Acid:

IYMIRVYLLQGWYIVTYALG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

76.9

33.7

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

89.2

0.88

0.6

Minor 5ss

31.4

-2.1

3.1

39.2

46.2

Minor BPS

48.8

-0

1.9

70.88

40.5

Associated Gene:

Gene:

RER1

Ensembl Gene ID:

ENSAPLG00000025171

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041368

579300 - 587682

8383

ENSAPLT00000009968

579575 - 584459

4885