Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_582591_583042_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

582591 - 583042

Intron Length:

452

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGATGA

5'SS Class:

strong_major

3'SS Sequence:

ATGTTTTCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTTTTCATTT

Flanking Amino Acid:

KVDPSLMEDSDDGPSLPTRQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

68.9

38.8

Major BPS

100

1.24

0.5

100

Major PPT

83.9

0.76

0.8

81.8

35.3

Minor 5ss

36.2

-1.6

3.2

47.9

47.5

Minor BPS

0.3

1.7

79.21

37.8

Associated Gene:

Gene:

RER1

Ensembl Gene ID:

ENSAPLG00000025171

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041368

579300 - 587682

8383

ENSAPLT00000009968

579575 - 584459

4885