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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5886234_5966291_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5886234 - 5966291
Intron Length:
80058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CGGTGCTGACGT
Flanking Amino Acid:
GVCAARASSEALLREEVAQL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
69.9
43.4
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
73.3
0.52
0.8
64.7
30.8
Minor 5ss
38.5
-1.3
3
49.7
46.5
Minor BPS
39.5
-0.7
2.2
52.77
48

Associated Gene:

Gene:
KAZN
Ensembl Gene ID:
ENSAPLG00000019373
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009939
5886101 - 5974304
88204