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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_590488_590855_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
590488 - 590855
Intron Length:
368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGATGA
5'SS Class:
major
3'SS Sequence:
CTGTGTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CCTGTGTTAATT
Flanking Amino Acid:
WKLHRSLALQKNMTKEKATG
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
64.1
36.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
63.4
0.3
1
63.4
42
Minor 5ss
45.1
-0.5
2.8
55.6
43.2
Minor BPS
48.8
-0
2.2
66.07
45.7

Associated Gene:

Gene:
PEX10
Ensembl Gene ID:
ENSAPLG00000009410
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009804
587568 - 593096
5529