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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5970980_5971234_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5970980 - 5971234
Intron Length:
255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGGCCG
5'SS Class:
major
3'SS Sequence:
TGCTTTTATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTGCTTTTATT
Flanking Amino Acid:
FIRNYEQHRKSFSAGWKPKA
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
56.8
42.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.1
0.72
0.9
81
35.7
Minor 5ss
27.3
-2.6
3.1
31.2
36.1
Minor BPS
64.7
0.55
1.7
83.31
38.3

Associated Gene:

Gene:
KAZN
Ensembl Gene ID:
ENSAPLG00000019373
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043323
5961117 - 5975901
14785
ENSAPLT00000040062
5963980 - 5974304
10325
ENSAPLT00000018794
5961117 - 5975901
14785