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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5973460_5974136_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5973460 - 5974136
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAC
5'SS Class:
major
3'SS Sequence:
GTTCCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTCAT
U12 Branch Point Sequence:
TTTTCCCTACAC
Flanking Amino Acid:
QKNLHNPIVQSLEDLEDQKR
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
63.9
42.4
Major BPS
67.4
0.43
1.2
69
38.9
Major PPT
83
0.74
0.8
76.8
31.7
Minor 5ss
29.7
-2.3
3.5
40.5
46
Minor BPS
57
0.2
2.1
76.61
39.2

Associated Gene:

Gene:
KAZN
Ensembl Gene ID:
ENSAPLG00000019373
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024307
5924894 - 5974304
49411
ENSAPLT00000018794
5961117 - 5975901
14785
ENSAPLT00000043323
5961117 - 5975901
14785
ENSAPLT00000009939
5886101 - 5974304
88204
ENSAPLT00000040062
5963980 - 5974304
10325
ENSAPLT00000024982
5961410 - 5974304
12895