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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5984378_5988315_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5984378 - 5988315
Intron Length:
3938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTAAC
U12 Branch Point Sequence:
AGCTGAGTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
49.6
-0
1.3
53.3
40.4
Major PPT
80.7
0.69
0.7
73
31.8
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
42
-0.6
2.4
54.43
43.3

Associated Gene:

Gene:
TMEM51
Ensembl Gene ID:
ENSAPLG00000023758
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025373
5983796 - 5990431
6636