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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5994238_5994594_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5994238 - 5994594
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
GCTCGCTGATCT
Flanking Amino Acid:
RHEGSDIVLKSAGVEDHHAA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
79.8
0.67
1
80.2
37.3
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
45.1
-0.2
2.1
63.14
46.4

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009694
5994126 - 6015432
21307
ENSAPLT00000046530
5994126 - 6015432
21307
ENSAPLT00000036630
5994126 - 6015432
21307
ENSAPLT00000022238
5994126 - 6015432
21307