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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5994802_5996910_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5994802 - 5996910
Intron Length:
2109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGCAA
5'SS Class:
major
3'SS Sequence:
TTTTCCACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGCTAATAACA
Flanking Amino Acid:
FELVVDEVPQTSYPPVKRRI
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
38.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.3
0.77
0.8
78.8
28.3
Minor 5ss
29.4
-2.4
3.3
37.9
46.9
Minor BPS
49.6
-0
1.9
66.89
39

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036630
5994126 - 6015432
21307
ENSAPLT00000022238
5994126 - 6015432
21307
ENSAPLT00000009694
5994126 - 6015432
21307
ENSAPLT00000046530
5994126 - 6015432
21307