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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5998646_5999034_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5998646 - 5999034
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGCTG
5'SS Class:
major
3'SS Sequence:
AACCTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
ACACATGGAACC
Flanking Amino Acid:
HSVDCLLQEKDEKLLRLEKE
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
62.3
43.6
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
62.5
0.28
0.9
54.5
35.5
Minor 5ss
29
-2.4
3.3
38.2
46.7
Minor BPS
39.2
-0.8
2
44.95
36.6

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036630
5994126 - 6015432
21307
ENSAPLT00000022238
5994126 - 6015432
21307
ENSAPLT00000046530
5994126 - 6015432
21307