About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5998646_6000321_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5998646 - 6000321
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGCTG
5'SS Class:
major
3'SS Sequence:
TCCTCTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTTTCCTCTATT
Flanking Amino Acid:
HSVDCLLQEKISDLQKDSSE
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
62.3
43.6
Major BPS
75.8
0.64
1
65.8
41
Major PPT
79
0.65
0.8
77.5
29.6
Minor 5ss
29
-2.4
3.3
38.2
46.7
Minor BPS
67.4
0.63
1.8
88.55
36.4

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009694
5994126 - 6015432
21307