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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_5999266_6000321_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5999266 - 6000321
Intron Length:
1056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTTTCCTCTATT
Flanking Amino Acid:
TEEIKTLKEQISDLQKDSSE
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.9
44.2
Major BPS
75.8
0.64
1
65.8
41
Major PPT
79
0.65
0.8
77.5
29.6
Minor 5ss
40
-1.1
3.2
58
46.3
Minor BPS
67.4
0.63
1.8
88.55
36.4

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046530
5994126 - 6015432
21307
ENSAPLT00000036630
5994126 - 6015432
21307
ENSAPLT00000022238
5994126 - 6015432
21307