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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6000446_6001305_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6000446 - 6001305
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
CTTGCCCAAATT
Flanking Amino Acid:
KLKRDHALTTGLVTSLQREI
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
84.4
0.77
0.8
80.2
32
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
48.9
-0
2.1
71.93
45.5

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046530
5994126 - 6015432
21307
ENSAPLT00000036630
5994126 - 6015432
21307
ENSAPLT00000022238
5994126 - 6015432
21307
ENSAPLT00000009694
5994126 - 6015432
21307