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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6001437_6003850_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6001437 - 6003850
Intron Length:
2414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCACC
5'SS Class:
major
3'SS Sequence:
TTTGTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ACTTTGATAATC
Flanking Amino Acid:
DNQLAVVSAKAEEELKNACE
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.2
70.9
39.4
Major BPS
84
0.85
0.9
75
39.9
Major PPT
86.6
0.82
0.9
84.6
36
Minor 5ss
37
-1.5
2.6
45
42.6
Minor BPS
46.8
-0.2
2.2
60.7
39.2

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022238
5994126 - 6015432
21307