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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6003959_6005222_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6003959 - 6005222
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
ATCTCTGCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCCTATATT
Flanking Amino Acid:
KSDVDRAKVQLASFKTQVVQ
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
71.7
0.49
0.9
66.2
35.1
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
65.6
0.57
2
87.87
37.8

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022238
5994126 - 6015432
21307
ENSAPLT00000009694
5994126 - 6015432
21307
ENSAPLT00000036630
5994126 - 6015432
21307