About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6003959_6005704_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6003959 - 6005704
Intron Length:
1746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
GTACTTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATGGAG
U12 Branch Point Sequence:
CTTCCCGTACTT
Flanking Amino Acid:
KSDVDRAKVQVLEKVRQICE
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
41.1
-0.5
1.6
38.4
41.7
Major PPT
69.7
0.44
1
65.7
40.7
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
48.7
-0
2.3
72.74
44.7

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046530
5994126 - 6015432
21307