About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6005307_6005704_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6005307 - 6005704
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTACTTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATGGAG
U12 Branch Point Sequence:
CTTCCCGTACTT
Flanking Amino Acid:
EAGKDLTVQQVLEKVRQICE
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
41.1
-0.5
1.6
38.4
41.7
Major PPT
69.7
0.44
1
65.7
40.7
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
48.7
-0
2.3
72.74
44.7

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036630
5994126 - 6015432
21307
ENSAPLT00000022238
5994126 - 6015432
21307
ENSAPLT00000009694
5994126 - 6015432
21307