Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6006399_6007640_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6006399 - 6007640

Intron Length:

1242

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCCTGTC

5'SS Class:

major

3'SS Sequence:

TGTGCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTAAT

U12 Branch Point Sequence:

CTTGCAGTAATA

Flanking Amino Acid:

AGLDLPTSGKGLTACLKRLL

Intron Amino Acid Position:

545

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.4

0.46

1.2

66.8

39.3

Major BPS

64.3

0.36

1.2

65.3

38.6

Major PPT

82.7

0.74

0.9

76.8

37.3

Minor 5ss

36.3

-1.6

3.5

52.1

45.1

Minor BPS

46.9

-0.2

2.3

63.77

43.2

Associated Gene:

Gene:

FHAD1

Ensembl Gene ID:

ENSAPLG00000009303

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046530

5994126 - 6015432

21307

ENSAPLT00000036630

5994126 - 6015432

21307

ENSAPLT00000022238

5994126 - 6015432

21307

ENSAPLT00000009694

5994126 - 6015432

21307