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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6007712_6007841_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6007712 - 6007841
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACTC
5'SS Class:
strong_major
3'SS Sequence:
CATTTCCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
ACTCCTTTCAGT
Flanking Amino Acid:
ETTQRNKMLQAQLEEFRESQ
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
71.7
0.49
0.8
65.9
29.9
Minor 5ss
35.9
-1.6
3.3
50.8
45.8
Minor BPS
48.5
-0
2
67.07
44.1

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046530
5994126 - 6015432
21307
ENSAPLT00000036630
5994126 - 6015432
21307
ENSAPLT00000022238
5994126 - 6015432
21307
ENSAPLT00000009694
5994126 - 6015432
21307