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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6010158_6010809_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6010158 - 6010809
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTAAG
5'SS Class:
major
3'SS Sequence:
TTGTCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
TTACCAACAAGT
Flanking Amino Acid:
ENITLLEKIEGLEGDACRVT
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.2
68.8
43.8
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
83.1
0.75
0.8
77.8
31
Minor 5ss
39.2
-1.2
3
50.1
46.4
Minor BPS
42.4
-0.4
2.2
65.51
43.9

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036630
5994126 - 6015432
21307
ENSAPLT00000022238
5994126 - 6015432
21307
ENSAPLT00000009694
5994126 - 6015432
21307
ENSAPLT00000046530
5994126 - 6015432
21307