About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6012196_6012521_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6012196 - 6012521
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAG
U12 Branch Point Sequence:
TGTACAGCAACG
Flanking Amino Acid:
QELKAAAAELRQAQEDCKAL
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.7
36.9
Major BPS
47.5
-0.1
1.6
60.7
45.9
Major PPT
72
0.5
1
67.4
37.9
Minor 5ss
32
-2.1
3.6
48.4
47.3
Minor BPS
42.5
-0.7
2.4
54.87
45.4

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046530
5994126 - 6015432
21307
ENSAPLT00000036630
5994126 - 6015432
21307
ENSAPLT00000022238
5994126 - 6015432
21307
ENSAPLT00000009694
5994126 - 6015432
21307