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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6012640_6014310_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6012640 - 6014310
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTG
5'SS Class:
major
3'SS Sequence:
CTTTGAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TGTGCTTTGAAT
Flanking Amino Acid:
PAMVEVASETEPALDLAELG
Intron Amino Acid Position:
912

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
64.7
46.6
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
78.6
0.64
0.9
74.6
39
Minor 5ss
34.8
-1.7
3.4
48.4
47.2
Minor BPS
61.2
0.43
1.6
76.74
40

Associated Gene:

Gene:
FHAD1
Ensembl Gene ID:
ENSAPLG00000009303
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046530
5994126 - 6015432
21307
ENSAPLT00000036630
5994126 - 6015432
21307
ENSAPLT00000022238
5994126 - 6015432
21307
ENSAPLT00000009694
5994126 - 6015432
21307