Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6025861_6027242_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6025861 - 6027242

Intron Length:

1382

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCTCCCCTG

5'SS Class:

weak_major

3'SS Sequence:

CATAAATACAAAG|T

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

ATTTCCATAAAT

Flanking Amino Acid:

INEVGARPPTSNL*

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.1

0.17

1.4

47.2

48.2

Major BPS

100

1.24

0.5

100

Major PPT

-0

1.1

45.3

39.2

Minor 5ss

-2.1

4.2

48.1

47.5

Minor BPS

71.3

0.75

1.7

89.34

34.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019333

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023753

6025546 - 6027252

1707