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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6029855_6030370_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6029855 - 6030370
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATCTT
5'SS Class:
strong_major
3'SS Sequence:
CTGATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTTCTGATTT
Flanking Amino Acid:
KLFFIQACGGDQKDQGFEVD
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
80.2
34.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.8
0.72
0.9
76.4
37.5
Minor 5ss
34.1
-1.8
3.2
49.5
46.7
Minor BPS
57.2
0.3
1.7
76.09
41.1

Associated Gene:

Gene:
CASP9
Ensembl Gene ID:
ENSAPLG00000008851
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009216
6028522 - 6035507
6986