About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6030519_6031142_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6030519 - 6031142
Intron Length:
624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGGAT
U12 Branch Point Sequence:
AGCTCTTGGATT
Flanking Amino Acid:
LVVILSHGCQTSHNQFPGGI
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
59.1
0.23
1.4
60.7
45.9
Major PPT
90.5
0.91
0.6
88.7
20.5
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
53.3
0.18
1.4
66.26
38.8

Associated Gene:

Gene:
CASP9
Ensembl Gene ID:
ENSAPLG00000008851
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009216
6028522 - 6035507
6986