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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6033685_6034263_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6033685 - 6034263
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
CGTGCTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGACTAT
U12 Branch Point Sequence:
CGTGCTGTTACA
Flanking Amino Acid:
LELSGEKRGKSESTVERLSI
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
48.8
-0
1.4
46.8
46.3
Major PPT
72
0.49
1
64
41.6
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
43.5
-0.5
2.3
55.12
44

Associated Gene:

Gene:
CASP9
Ensembl Gene ID:
ENSAPLG00000008851
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009216
6028522 - 6035507
6986