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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6037189_6038116_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6037189 - 6038116
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGACG
5'SS Class:
major
3'SS Sequence:
TCTCCCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTACGTGGATT
Flanking Amino Acid:
KEVAQELEALGVGIGVVHAG
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
67
44.2
Major BPS
74.2
0.6
1
67
39.4
Major PPT
80
0.67
0.8
73.7
29.6
Minor 5ss
32.1
-2
3
32.9
41.7
Minor BPS
49.1
0.01
2.2
76.57
40.3

Associated Gene:

Gene:
DNAJC16
Ensembl Gene ID:
ENSAPLG00000008368
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036316
6035583 - 6044187
8605
ENSAPLT00000031519
6035583 - 6044187
8605
ENSAPLT00000008723
6035583 - 6043675
8093