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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6039006_6039592_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6039006 - 6039592
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCAA
5'SS Class:
major
3'SS Sequence:
TCTTCCCGTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TCTGATGTAAAC
Flanking Amino Acid:
HMPVVPLLYKLTAFAYRDYL
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
65.8
41.7
Major BPS
79
0.72
1
69
38.9
Major PPT
77.6
0.62
0.9
69.6
36.7
Minor 5ss
35.6
-1.6
3.3
47
48.3
Minor BPS
43.2
-0.5
2.2
55.76
42.9

Associated Gene:

Gene:
DNAJC16
Ensembl Gene ID:
ENSAPLG00000008368
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036316
6035583 - 6044187
8605
ENSAPLT00000031519
6035583 - 6044187
8605
ENSAPLT00000008723
6035583 - 6043675
8093