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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6040209_6040498_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6040209 - 6040498
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
GAGCTCTTACTC
Flanking Amino Acid:
CPVKKSHRQRKHCVVLLTGE
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
79.7
33.7
Major BPS
69.2
0.48
1
61
37.1
Major PPT
72.2
0.5
1
65.1
45.5
Minor 5ss
38.5
-1.3
3.3
52.3
38.8
Minor BPS
48.7
-0.1
1.6
53.14
38.6

Associated Gene:

Gene:
DNAJC16
Ensembl Gene ID:
ENSAPLG00000008368
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036316
6035583 - 6044187
8605
ENSAPLT00000031519
6035583 - 6044187
8605
ENSAPLT00000008723
6035583 - 6043675
8093