About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6041051_6041300_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6041051 - 6041300
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTCTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAAAC
Flanking Amino Acid:
LADLRDELAPMFLIRWFYST
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.1
72.2
37.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.7
0.62
0.9
74.6
34
Minor 5ss
38.2
-1.3
3.4
60.6
43.7
Minor BPS
68.2
0.55
1.6
79.83
34.7

Associated Gene:

Gene:
DNAJC16
Ensembl Gene ID:
ENSAPLG00000008368
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008723
6035583 - 6043675
8093
ENSAPLT00000036316
6035583 - 6044187
8605
ENSAPLT00000031519
6035583 - 6044187
8605