Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6041943_6042040_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6041943 - 6042040

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

AATTCCTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

AGCCCTTTAAAC

Flanking Amino Acid:

LFGTVIVQAFSDSSDTRDSP

Intron Amino Acid Position:

558

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.7

80.2

27.1

Major BPS

71.2

0.53

70.3

31.9

Major PPT

80.6

0.69

0.9

35.6

Minor 5ss

27.5

-2.6

32.5

42.3

Minor BPS

57.4

0.21

1.4

60.4

38.3

Associated Gene:

Gene:

DNAJC16

Ensembl Gene ID:

ENSAPLG00000008368

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036316

6035583 - 6044187

8605

ENSAPLT00000031519

6035583 - 6044187

8605

ENSAPLT00000008723

6035583 - 6043675

8093