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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6042140_6042709_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6042140 - 6042709
Intron Length:
570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTCCCTCT
5'SS Class:
weak_major
3'SS Sequence:
TGTTTCGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCCCCTTTCACT
Flanking Amino Acid:
NDTNFSKESNSRVPKKGFVE
Intron Amino Acid Position:
591

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.4
55.5
44.2
Major BPS
77.7
0.69
1
81
30.2
Major PPT
82.8
0.74
0.9
77.1
37.1
Minor 5ss
47.3
-0.3
2.8
67.1
43.6
Minor BPS
57.8
0.33
1.8
72.56
44.8

Associated Gene:

Gene:
DNAJC16
Ensembl Gene ID:
ENSAPLG00000008368
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031519
6035583 - 6044187
8605