About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6047396_6048176_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6047396 - 6048176
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AGTTATTTATTT
Flanking Amino Acid:
VEVAPMYDVSGNTALLGANL
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68
38.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.7
0.78
0.7
80.8
31.2
Minor 5ss
29.5
-2.3
2.7
34.5
41
Minor BPS
54
0.2
1.7
71.97
39.2

Associated Gene:

Gene:
AGMAT
Ensembl Gene ID:
ENSAPLG00000008104
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008412
6047322 - 6050581
3260