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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6050214_6050513_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
6050214 - 6050513
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTGG
5'SS Class:
major
3'SS Sequence:
GCTGGGGCTCGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGTGCAG
U12 Branch Point Sequence:
GCTCCGTGCAGG
Flanking Amino Acid:
ARLLLGRVRKSFNVPPSAEF
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
63.5
43.2
Major BPS
39.6
-0.6
1.7
46.5
47
Major PPT
44.8
-0.3
1.7
38.5
44.6
Minor 5ss
42
-0.9
2.4
50.4
45.9
Minor BPS
34.4
-1.3
2.5
37.98
44.5

Associated Gene:

Gene:
AGMAT
Ensembl Gene ID:
ENSAPLG00000008104
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008412
6047322 - 6050581
3260