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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6052554_6052827_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6052554 - 6052827
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
ACTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TTCCCTCTCACT
Flanking Amino Acid:
KLLLQRDPNKRLSARVAANV
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
82.4
0.73
0.8
76.6
31.3
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
49.3
0.03
2.1
73.75
43.2

Associated Gene:

Gene:
PINK1
Ensembl Gene ID:
ENSAPLG00000007692
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007984
6051497 - 6061594
10098