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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6053869_6055027_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6053869 - 6055027
Intron Length:
1159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGCAGG
5'SS Class:
major
3'SS Sequence:
CTGTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
CACACACTAACC
Flanking Amino Acid:
SDNILVELDSAGCPWLVITD
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.2
54.5
49.7
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
82.3
0.73
0.8
76.6
31.9
Minor 5ss
36.9
-1.5
3.1
39.5
46.2
Minor BPS
46
-0.3
2
54.46
42.8

Associated Gene:

Gene:
PINK1
Ensembl Gene ID:
ENSAPLG00000007692
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007984
6051497 - 6061594
10098