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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6055192_6055999_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6055192 - 6055999
Intron Length:
808

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTGGG
5'SS Class:
major
3'SS Sequence:
TCGTTCCCACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TCGTTCCCACTA
Flanking Amino Acid:
HSRTLFLVMKNYPCTLRQYL
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
60.8
44.4
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
66.7
0.38
0.9
60.2
36.7
Minor 5ss
32.4
-2
3.4
39.4
40.8
Minor BPS
42
-0.6
2
51.15
41.2

Associated Gene:

Gene:
PINK1
Ensembl Gene ID:
ENSAPLG00000007692
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007984
6051497 - 6061594
10098