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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6056183_6058663_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6056183 - 6058663
Intron Length:
2481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTAG
5'SS Class:
major
3'SS Sequence:
CACTTCTGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAGAT
U12 Branch Point Sequence:
ATGAGTGTAACT
Flanking Amino Acid:
AGEYGAVSCRRKPVLRRKKL
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.6
41.6
Major BPS
57.5
0.19
1
52.7
34.2
Major PPT
69.5
0.44
0.9
64.6
36.1
Minor 5ss
34.7
-1.7
3.5
45.4
49.7
Minor BPS
45.5
-0.2
2.3
66.41
44.6

Associated Gene:

Gene:
PINK1
Ensembl Gene ID:
ENSAPLG00000007692
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007984
6051497 - 6061594
10098