About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6058768_6059660_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6058768 - 6059660
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
CGTGCTGTGACC
Flanking Amino Acid:
LAIKMMWNISAGSSSEAILD
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.2
43
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
81.9
0.72
0.9
76.3
37.7
Minor 5ss
33.1
-1.9
3.2
43.9
43.7
Minor BPS
46.6
-0.2
2.1
57.52
42.2

Associated Gene:

Gene:
PINK1
Ensembl Gene ID:
ENSAPLG00000007692
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007984
6051497 - 6061594
10098