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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6063300_6063612_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6063300 - 6063612
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGCAT
U12 Branch Point Sequence:
GCATCGGGCACC
Flanking Amino Acid:
CGACRQVMREFGKDWDVYLT
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
72.2
39.5
Major BPS
59.9
0.25
1.5
71.4
45.1
Major PPT
82.8
0.74
0.7
77.1
24.8
Minor 5ss
34.5
-1.8
3.4
45.9
49.3
Minor BPS
34.1
-1.2
2.7
44.36
43.4

Associated Gene:

Gene:
CDA
Ensembl Gene ID:
ENSAPLG00000018400
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026858
6063186 - 6065758
2573