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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6063671_6063774_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6063671 - 6063774
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
CGTCCCTGAGCC
Flanking Amino Acid:
HTRFRAMAIASDMGTDFIVP
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
73
0.52
0.9
69.4
31.3
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
50.6
-0
1.8
62.01
42.7

Associated Gene:

Gene:
CDA
Ensembl Gene ID:
ENSAPLG00000018400
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026858
6063186 - 6065758
2573