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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6072753_6073208_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6072753 - 6073208
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGCAT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATACTTTAAAT
Flanking Amino Acid:
VLVTTNVCARGIDVEQVSVV
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.6
42.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
86.5
0.82
0.8
81.6
34.7
Minor 5ss
31
-2.2
3.6
46.2
49.1
Minor BPS
67
0.61
1.4
78.06
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017035
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022827
6067649 - 6073483
5835