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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6083215_6086112_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6083215 - 6086112
Intron Length:
2898

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCGATGTGG
5'SS Class:
weak_major
3'SS Sequence:
GGATCTGCAGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGGTCAT
U12 Branch Point Sequence:
ACCTCTGGGATC
Flanking Amino Acid:
CHLPNPRLMLMLTKVTGRNA
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.3
45.5
42.7
Major BPS
51.9
0.05
1.5
57.1
49.4
Major PPT
48.6
-0
1.2
46.4
40.4
Minor 5ss
20.6
-3.4
3.8
26
39.1
Minor BPS
41.8
-0.6
2
47.3
37

Associated Gene:

Gene:
PLA2G2D
Ensembl Gene ID:
ENSAPLG00000024116
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027432
6082981 - 6089847
6867