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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6083657_6083799_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6083657 - 6083799
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CTGGCACTGACA
Flanking Amino Acid:
GRGTPVDATDSCCRAHDCCY
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
76.7
0.6
0.9
70.1
36.4
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
44.8
-0.4
2
56.04
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030184
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041288
6078631 - 6084246
5616