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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_22_6083907_6084100_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6083907 - 6084100
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CACCGCTGAACT
Flanking Amino Acid:
FEVTDGDITCGNEQSWCKRE
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
83.1
28.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
75.9
0.58
0.8
70.2
30.7
Minor 5ss
35
-1.7
2.8
42.6
38.5
Minor BPS
48.3
-0
1.9
63.44
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030184
Chromosome:
22

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041288
6078631 - 6084246
5616